Sebastian Will, Anke Busch, Rolf Backofen:
Constrained Alignment Using Cluster Tree Elimination.
Abstract
We revisit sequence comparison with side constraints. Often, when prior knowledge about the molecules is available, it is desirable to incorporate this information into the alignment. We introduce a constraint-based approach that allows for easy integration of various kinds of additional information, while preserving the efficiency of dynamic programming.
URL:
http://rewerse.net/publications/rewerse-publications.html#REWERSE-RP-2006-113
@inproceedings{REWERSE-RP-2006-113,
author = {Sebastian Will and Anke Busch and Rolf Backofen},
title = {Constrained Alignment Using Cluster Tree Elimination},
booktitle = {Proceedings of 14th Annual International conference on Intelligent Systems for Molecular Biology, Fortaleza, Brazil (6th--10th August 2006)},
year = {2006},
organization = {International Society for Computational Biology},
url = {http://rewerse.net/publications/rewerse-publications.html#REWERSE-RP-2006-113}
}