UK Ontology Network 2018

This week I went to the UK Ontology Network meeting hosted at Keele University. There was an interesting array of talks in the programme showing the breadth of work going on in the UK.

I gave a talk on the Bioschemas Community  (slides below) and Leyla Garcia presented a poster providing more details of the current Bioschema Profiles.

The UK Ontology Network is going through a reflection phase and would like interested parties to complete the following online survey.

 

Bioschemas Samples Hackathon

Last week the Bioschemas Community hosted a workshop. The focus of the meeting was to get web resources describing biological samples to embed Schema.org mark up in their pages. The embedded mark up will enable the web resources to become more discoverable, and therefore the biological samples also.

I was not able to attend the event but Justin Clark-Casey has written this blog post summarising the event.

NAR Database Paper

The new year started with a new publication, an article in the 2018 NAR Database issue about the IUPHAR Guide to Pharmacology Database.

My involvement came from Liam Bruce’s honours project. Liam developed the RDB2RDF mappings that convert the existing relational content into an RDF representation. The mappings are executed using the Morph-RDB R2RML engine.

To ensure that we abide by the FAIR data principles, we also generate machine processable metadata descriptions of the data that conform to the HCLS Community Profile.

Below is an altmetric donut so you can see what people are saying about the paper.

ISWC2017 Papers

I have had two papers accepted within the events that make up ISWC2017.

My PhD student Qianru Zhou has been working on using RDF stream processing to detect anomalous events through telecommunication network messages. The particular scenario in our paper that will be presented at the Web Stream Processing workshop focuses on detecting a disaster such as the capsizing of the Eastern Star on the Yangtze River [1].

The second paper is a poster in the main conference that provides an overview of the Bioschemas project where we are identifying the Schema.org markup that is of primary importance for life science resources. Hopefully the paper title will pull the punters in for the session [2].

[1] Qianru Zhou, Stephen McLaughlin, Alasdair J. G. Gray, Shangbin Wu, and Chengxiang Wang. Lost Silence: An emergency response early detection service through continuous processing of telecommunication data streams. In Web Stream Processing 2017, Vienna, Austria, oct 2017.
[Bibtex]
@InProceedings{ZhouEtal2017:LostSilence:WSP2017,
abstract = {Early detection of significant traumatic events, e.g. terrorist events, ship capsizes, is important to ensure that a prompt emergency response can occur. In the modern world telecommunication systems can and do play a key role in ensuring a successful emergency response by detecting such incidents through significant changes in calls and access to the networks. In this paper a methodology is illustrated to detect such incidents immediately (with the delay in the order of milliseconds), by processing semantically annotated streams of data in cellular telecommunication systems. In our methodology, live information of phones' positions and status are encoded as RDF streams. We propose an algorithm that processes streams of RDF annotated telecommunication data to detect abnormality. Our approach is exemplified in the context of capsize of a passenger cruise ship but is readily translatable to other incidents. Our evaluation results show that with properly chosen window size, such incidents can be detected effectively.},
author = {Qianru Zhou and Stephen McLaughlin and Alasdair J G Gray and Shangbin Wu and Chengxiang Wang},
title = {Lost Silence: An emergency response early detection service through continuous processing of telecommunication data streams},
OPTcrossref = {},
OPTkey = {},
booktitle = {Web Stream Processing 2017},
year = {2017},
OPTeditor = {},
OPTvolume = {},
OPTnumber = {},
OPTseries = {},
OPTpages = {},
month = oct,
address = {Vienna, Austria},
OPTorganization = {},
OPTpublisher = {},
OPTnote = {},
url = {http://ceur-ws.org/Vol-1936/paper-03.pdf},
OPTannote = {}
}
[2] Unknown bibtex entry with key [grayetal2017:bioschemas:iswc2017]
[Bibtex]

SICSA Digital Humanities Event

On 24 August I attended the SICSA Digital Humanities event hosted at Strathclyde University. The event was organised by Martin Halvey and Frank Hopfgartner. The event brought together cultural heritage practitioners, and researchers from the humanities and computer science.

The day started off with a keynote from Lorna Hughes, Professor of Digital Humanities at the University of Glasgow. She highlighted that there is not a single definition for digital humanities (weblink presents a random definition from a set collected at another event). However, at the core, digital humanities consists of:

  • Digital content
  • Digital methods
  • Tools

The purpose of digitial humanities is to enable better and/or faster outputs as well as conceptualising new research questions.

Lorna showcased several projects that she has been involved with highlighting the issues that were faced before identifying a set of lessons learned and challenges going forward (see her blog and slideshare). She highlighted that only about 10% of content has been transformed into a digital form, and of that only 3% is openly available. Additionally, some artefacts have been digitised in multiple ways at different time points, and the differences in these digital forms tells a story about the object.

Lorna highlighted the following challenges:

  • Enabling better understanding of digital content
  • Developing underlying digital infrastructure
  • Supporting the use of open content
  • Enabling the community
  • Working with born-digital content.

The second part of the day saw us brainstorming ideas in groups. Two potential apps were outlined to support the public get more out of the cultural heritage environment around us.

An interesting panel discussion was had, focused around what you would do with a mythical £350m. It also involved locking up 3D scanners, at least until appropriate methodology and metadata was made available.

The day finished off with an interesting keynote from Daniela Petrelli, Sheffield Hallam University. This was an interesting talk focussing on the outputs of the EU meSch project. A holistic design approach on the visitor experience was proposed that encompassed interaction design, product design, and content design. See the below embedded video for an idea.

Summary

There are lots of opportunities for collaboration between digital humanities and computing. From my perspective, there are lots of interesting challenges around capturing data metadata, linking between datasets, and capturing provenance of workflows.

Throughout the day, various participants were tweeting with the #dhfest hashtag.