Here is a list of selected papers (and their pdfs or online links), organised by research areas:
The following two papers provide a good overview of work I am involved in relating to Biomedical Atlas Informatics:
- Biomedical Atlases: systematics, informatics and analysis. Richard Baldock, Albert Burger. Advances in experimental medicine and biology, 736 (2012) 655--677. 2012. [pdf]
- Digital atlasing and standardisation in the mouse brain. Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allen Johnson, Maryann Martone, Lydi Ng, Chris Lau, Stephen Larsen, Jonathon Nissanov, Luis Puelles, Seth Ruffins, Fons Verbeek, Ilya Zaslavsky and Jyl Boline. PLOS Computational biology, 7(2): e1001065. 2011. [pdf]
For a description on using Semantic Web Technologies in the context of Gene Expression data, see:
- Argudas: lessons for argumentation in biology based on a gene expression use case, Kenneth McLeod, Gus Ferguson and Albert Burger, BMC Bioinformatics 2012, 13(Suppl 1):S8, 2012. [pdf]
- Knowledge-driven Enhancements for Task Composition in Bioinformatics. Karen Sutherland, Kenneth McLeod, Gus Ferguson and Albert Burger. BMC Bioinformatics, 10(Suppl 10):S12, 2009. [pdf]
Papers describing some work relating to Anatomy Ontologies can be found here:
- EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. Hayamizu T.F., Wicks, M.N., Davidson, D.R., Burger, A., Ringwald, M. and Baldock, R. In Journal of Biomedical Semantics, 2013, 4:15 [pdf]
- Anatomy Ontologies for Bioinformatics: Principles and Practice. Albert Burger, Duncan Davidson and Richard Baldock (Editors). Springer, 2008, ISBN 978-1-84628-884-5. 2008. [link to publisher]
- Anatomical Ontologies: Names and Places in Biology. Richard Baldock and Albert Burger. Genome Biology, 6:108, 2005. [pdf]
- Providing visualisation support for the analysis of anatomy ontology data. Aba-Sah Dadzie and Albert Burger, BMC Bioinformatics, 6:74, 2005. Online: http://www.biomedcentral.com/1471-2105/6/74. [pdf]
- Formalization of mouse embryo anatomy, Albert Burger, Duncan Davidson and Richard Baldock. Bioinformatics Journal , Volume 20, No 2, pp 259-267, January 2004. [pdf]
- Integrating partonomic hierarchies in anatomy ontologies, Albert Burger, Duncan Davidson, Yiya Yang and Richard Baldock, BMC Bioinformatics, 5:184, 2004. [pdf]
For some work relating to Multiagent Systems in Biomedical Informatics see:
- Agent Technologies in the Life Sciences, Albert Burger, Chapter in Semantic Web: Revolutionizing Knowledge and Discovery in the Life Sciences. , Christopher Baker, and Kei-Hoi Cheung (Editors). Springer, 2007, pages 341-352. 2007. [link to publisher]
- A Criticality-Based Framework for Task Composition in Multi-Agent Bioinformatics Integration Systems. Konstantinos Karasavvas, Richard Baldock and Albert Burger. Bioinformatics Journal, Volume 21, No 14, pp 3155-3163, 2005. PubMed ID: 15890745. [pdf]
- Bioinformatics Integration and Agent Technology, Konstantinos Karasavvas, Richard Baldock and Albert Burger, Journal of Biomedical Informatics, Vol 37/3, pp 205-219, 2004. [pdf]
[Complete List of Publications since 2000] - [Complete List of Publications prior 2000]