BISEL

Below are links to papers, posters and deliverable reports generated by the Edinburgh team in the SEALIFE project.

Knowledge-driven Enhancements for Task Composition in Bioinformatics.
Karen Sutherland, Kenneth McLeod, Gus Ferguson, Albert Burger.
BMC Bioinformatics, 10(Suppl 10):S12, 2009.
Available Online
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Using Argumentation to resolve conflict in Biological Databases.
Kenneth McLeod, Gus Ferguson, and Albert Burger.
In N. Green, F. Grasso, R. Kibble, and C. Reed (Editors) Proceedings of Computation Models of Natural Argument (CMNA) 9, pages 15--23, Pasadena, USA, July 2009.
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Sealife evaluation.
Technical Report 0063, Dept of Computer Science, Heriot-Watt University 2009.
Gus Ferguson, Kenneth Mc Leod, Karen Sutherland and Albert Burger.
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Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases.
Paper summarising the objectives of the whole project.
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Task Composition for biologists.
Poster for ISMB 2007.
Karen Sutherland, Kenneth McLeod and Albert Burger.
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Using Argumentation To Tackle Inconsistency And Incompleteness In Online Distributed Life Science Resources.
Paper for IADIS - International Conference Applied Computing 2007.
Kenneth McLeod and Albert Burger.
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Semantically Linking Web Pages to Web Services in Bioinformatics.
Paper in Proceedings of 3rd International AST
(Applications of Semantic Technologies) Workshop 2008.
Karen Sutherland, Kenneth McLeod and Albert Burger.
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Towards the use of Argumentation in Bioinformatics: A Gene Expression Case Study.
Paper for ISMB 2008.
Kenneth McLeod and Albert Burger.
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Goal-Oriented Task Composition for Bioinformatics.
Poster for SWAT4LS (Semantic Web Applications and Tools for Life Sciences) 2008.
Karen Sutherland and Albert Burger.
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Anatomy Ontologies for Bioinformatics: Principles and Practice
Albert Burger, Duncan Davidson and Richard Baldock (Editors).
Springer, 2008, ISBN 978-1-84628-884-5. 2008.

XSPAN: A Cross-Species Anatomy Network.
Albert Burger and Jonathan Bard.
Chapter in Anatomy Ontologies for Bioinformatics: Principles and Practice.
Albert Burger, Duncan Davidson, Richard Baldock (Editors), , Springer, 2008.

Anatomical Ontologies: Linking Names to Places in Biology.
Richard Baldock and Albert Burger.
Chapter in Anatomy Ontologies for Bioinformatics: Principles and Practice
Albert Burger, Duncan Davidson, Richard Baldock (Editors), Springer, 2008.

Agent Technologies in the Life Sciences
Albert Burger
Chapter in Semantic Web: Revolutionizing Knowledge and Discovery in the Life Sciences.
Baker, Christopher and Cheung, Kei-Hoi, Editors, Springer, 2007, pages 341-352.

Deliverable 1.
I3-D1 Speciﬁcation of available services Semantic descriptions of Web/Grid Services and workﬂows relevant to target applications.
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Deliverable 2.
I3-D2 Final deﬁnition of web services and service broker module Identiﬁcation and deployment of relevant Web/Grid Services and module to broker between services.
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Deliverable 3.
I3-D3 Composition of complex services SeaLife Web/Grid service/workﬂow enactment module, which allows the execution of complex services.
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Click on the link below to visit the SEALIFE Project website:
http://www.biotec.tu-dresden.de/SEALIFE

Biomedical Informatics Systems Engineering Laboratory